pylipid.api
===========

.. currentmodule:: pylipid.api

.. autoclass:: LipidInteraction

   .. rubric:: Methods

   .. autosummary::
      :toctree: generated/

      ~LipidInteraction.collect_residue_contacts
      ~LipidInteraction.compute_residue_duration
      ~LipidInteraction.compute_residue_occupancy
      ~LipidInteraction.compute_residue_lipidcount
      ~LipidInteraction.compute_residue_koff
      ~LipidInteraction.compute_binding_nodes
      ~LipidInteraction.compute_site_duration
      ~LipidInteraction.compute_site_occupancy
      ~LipidInteraction.compute_site_lipidcount
      ~LipidInteraction.compute_site_koff
      ~LipidInteraction.analyze_bound_poses
      ~LipidInteraction.compute_surface_area
      ~LipidInteraction.write_site_info
      ~LipidInteraction.show_stats_per_traj
      ~LipidInteraction.save_data
      ~LipidInteraction.save_coordinate
      ~LipidInteraction.save_pymol_script
      ~LipidInteraction.plot
      ~LipidInteraction.plot_logo


   .. rubric:: Attributes

   .. autosummary::
      :toctree: generated

      ~LipidInteraction.dataset
      ~LipidInteraction.residue_list
      ~LipidInteraction.node_list
      ~LipidInteraction.lipid
      ~LipidInteraction.lipid_atoms
      ~LipidInteraction.cutoffs
      ~LipidInteraction.nprot
      ~LipidInteraction.stride
      ~LipidInteraction.dt_traj
      ~LipidInteraction.trajfile_list
      ~LipidInteraction.topfile_list
      ~LipidInteraction.resi_offset
      ~LipidInteraction.save_dir
      ~LipidInteraction.timeunit
      ~LipidInteraction.koff
      ~LipidInteraction.res_time
      ~LipidInteraction.koff_bs
      ~LipidInteraction.res_time_bs
      ~LipidInteraction.residue
      ~LipidInteraction.binding_site