pylipid.plot.plot_corrcoef

pylipid.plot.plot_corrcoef(corrcoef, residue_index, cmap='Reds', vmin=None, vmax=None, fn=None, title=None, fig_close=False)[source]

Plot correlation coefficient matrix.

Parameters

  • corrcoef (array_like) – A scalar 2D array of correlation coefficient matrix.

  • residue_index (array_list, optional, default=None) – A 1D array of residue index.

  • cmap (str or matplotlib.colors.Colormap, optional, default=”coolwarm”) – A Colormap instance or matplotlib register colormap name. The colormap maps corrcoef to colors.

  • fn (str, optional, default=None) – Figure name. By default the figure is saved as “Figure_corrcoef.pdf” as the current working directory.

  • title (str, optional, default=None) – Figure title.

  • fig_close (bool, optional, default=False) – Use plt.close() to close the figure. Can be used to save memory if many figures are opened.